SPLIT-PIN

SPLIT-PIN enhances optical sectioning in point-scanning microscopy by applying the SPLIT (separation of photons by lifetime tuning) algorithm to image series acquired with tunable pinhole sizes to optimize axial resolution while preserving signal-to-noise ratio.


Key Features:

  • Optical Sectioning Enhancement: Applies the SPLIT (separation of photons by lifetime tuning) algorithm to image series acquired with tunable pinhole sizes to improve optical sectioning without closing the pinhole, preserving signal-to-noise ratio.
  • Compatibility with Commercial Microscopes: Operates on data from microscopes equipped with tunable pinholes, including confocal and stimulated emission depletion (STED) systems.
  • Image Processing Capabilities: Processes series of images acquired at different pinhole sizes to generate outputs with reduced out-of-focus background and enhanced image clarity.

Scientific Applications:

  • Confocal Imaging: Improves confocal imaging and the visualization of DNA in non-adherent cell lines by reducing out-of-focus light.
  • Super-Resolution STED Microscopy: Removes out-of-focus background in STED microscopy to improve image quality for sub-diffraction-limit structural analysis.
  • Live Cell Imaging: Applies to live-cell imaging scenarios such as intestinal organoids stained with membrane dyes to maintain signal integrity during dynamic imaging.

Methodology:

Analyzes image series captured at various pinhole sizes and applies the SPLIT algorithm to separate photons based on their lifetimes, enabling enhanced optical sectioning and out-of-focus background reduction.

Topics

Details

License:
Not licensed
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
MATLAB
Added:
3/17/2023
Last Updated:
11/24/2024

Operations

Publications

Di Franco E, Costantino A, Cerutti E, D’Amico M, Privitera AP, Bianchini P, Vicidomini G, Gulisano M, Diaspro A, Lanzanò L. SPLIT-PIN software enabling confocal and super-resolution imaging with a virtually closed pinhole. Scientific Reports. 2023;13(1). doi:10.1038/s41598-023-29951-9. PMID:36792719. PMCID:PMC9931717.

PMID: 36792719
PMCID: PMC9931717
Funding: - Ministero dello Sviluppo Economico: F/200110/02/X45 - Associazione Italiana per la Ricerca sul Cancro: My First AIRC Grant) Grant ID 21931