SRCV

SRCV extracts chemical-shift values, integrals, and shift ranges from ^13C and ^1H NMR spectral images using machine learning and computer vision to enable automated NMR data extraction for spectral database construction and structure elucidation.


Key Features:

  • Function modules: SRCV is organized into four function modules that extract chemical shifts for ^13C and ^1H, determine integral values, and identify shift ranges from NMR spectral images.
  • Machine learning for number recognition: Models are trained on curated datasets for number recognition and use a k-nearest neighbor (kNN) algorithm with k = 4, achieving a reported perfect recognition rate.
  • Computer vision: Computer vision methods interpret visual patterns in spectral images to locate and parse numeric annotations corresponding to chemical shifts and integrals.
  • Performance: Extraction accuracy has been validated with reported per-image processing times between 11 and 21 seconds.

Scientific Applications:

  • Literature data extraction: Extraction of ^13C and ^1H NMR data from published spectral images to support construction of comprehensive spectral databases.
  • Integration with structure elucidation systems: Automated import of NMR chemical-shift and integral data into computer-assisted structure elucidation workflows.

Methodology:

Training of machine-learning models on curated number-recognition datasets, application of a k-nearest neighbor (kNN) classifier with k = 4, and use of computer vision to interpret spectral image patterns and extract numeric chemical data.

Topics

Details

License:
MIT
Programming Languages:
C++
Added:
1/18/2021
Last Updated:
2/21/2021

Operations

Publications

Jia W, Yang Z, Yang M, Cheng L, Lei Z, Wang X. Machine Learning Enhanced Spectrum Recognition Based on Computer Vision (SRCV) for Intelligent NMR Data Extraction. Journal of Chemical Information and Modeling. 2020;61(1):21-25. doi:10.1021/acs.jcim.0c01046. PMID:33170690.

PMID: 33170690
Funding: - Chinese Academy of Medical Sciences: 2017-I2M-3-011, 2019-I2M-1-005 - Disciplines Construction Project: 201920200802