SSATAN-X
SSATAN-X accelerates stochastic simulation of pathogen spreading dynamics on time-evolving adaptive networks to enable efficient analysis of coupled contact and infection processes.
Key Features:
- Efficient Simulation: Focuses simulation on contact dynamics that directly influence pathogen spread, achieving up to a 100-fold speed-up compared to traditional stochastic simulation algorithms (SSA).
- Adaptive Network Modeling: Models systems where contact and infection dynamics are interdependent, capturing feedback between transmission and risk-behavior–driven contact changes.
- Scalability and Applicability: Delivers pronounced efficiency gains for fast-evolving contact networks with short-lived contacts and low per-exposure infection risks typical of many infectious diseases.
- Benchmarking Support: Enables generation of benchmark datasets for validation of numerical methods and for data-driven analyses of spreading dynamics on adaptive networks.
Scientific Applications:
- Epidemiological modeling: Facilitates study of transmission dynamics in adaptive-contact settings to inform prevention and containment strategies.
- Method validation: Provides benchmark datasets and simulations to validate new numerical methods and simulation techniques for infectious-disease spread.
- Policy and cost-effectiveness analysis: Supports analyses of intervention impact and policy decisions that depend on accurate simulation of coupled contact–infection dynamics.
Methodology:
SSATAN-X simulates only contact events that are relevant to pathogen spread and optimizes which interactions to simulate based on their impact on spreading dynamics.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- C++
- Added:
- 3/13/2022
- Last Updated:
- 3/13/2022
Operations
Data Inputs & Outputs
Modelling and simulation
Publications
Malysheva N, von Kleist M. Stochastic Simulation Algorithm for effective spreading dynamics on Time-evolving Adaptive NetworX (SSATAN-X). Unknown Journal. 2021. doi:10.1101/2021.11.22.469498.