SSATAN-X

SSATAN-X accelerates stochastic simulation of pathogen spreading dynamics on time-evolving adaptive networks to enable efficient analysis of coupled contact and infection processes.


Key Features:

  • Efficient Simulation: Focuses simulation on contact dynamics that directly influence pathogen spread, achieving up to a 100-fold speed-up compared to traditional stochastic simulation algorithms (SSA).
  • Adaptive Network Modeling: Models systems where contact and infection dynamics are interdependent, capturing feedback between transmission and risk-behavior–driven contact changes.
  • Scalability and Applicability: Delivers pronounced efficiency gains for fast-evolving contact networks with short-lived contacts and low per-exposure infection risks typical of many infectious diseases.
  • Benchmarking Support: Enables generation of benchmark datasets for validation of numerical methods and for data-driven analyses of spreading dynamics on adaptive networks.

Scientific Applications:

  • Epidemiological modeling: Facilitates study of transmission dynamics in adaptive-contact settings to inform prevention and containment strategies.
  • Method validation: Provides benchmark datasets and simulations to validate new numerical methods and simulation techniques for infectious-disease spread.
  • Policy and cost-effectiveness analysis: Supports analyses of intervention impact and policy decisions that depend on accurate simulation of coupled contact–infection dynamics.

Methodology:

SSATAN-X simulates only contact events that are relevant to pathogen spread and optimizes which interactions to simulate based on their impact on spreading dynamics.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
C++
Added:
3/13/2022
Last Updated:
3/13/2022

Operations

Data Inputs & Outputs

Publications

Malysheva N, von Kleist M. Stochastic Simulation Algorithm for effective spreading dynamics on Time-evolving Adaptive NetworX (SSATAN-X). Unknown Journal. 2021. doi:10.1101/2021.11.22.469498.