STAB
STAB maps spatio-temporal single-cell transcriptomic landscapes of the human brain to characterize cellular and transcriptome architecture across development and in neuropsychiatric disorders.
Key Features:
- Single-Cell Transcriptomes: Incorporates single-cell RNA sequencing (scRNA-seq) data to provide gene expression profiles at the individual cell level.
- Comprehensive Coverage: Includes data from 42 distinct cell subtypes across 20 brain regions spanning 11 developmental periods.
- Spatio-Temporal Dynamics: Integrates spatial and temporal annotation to reveal regional heterogeneity and changes in cell types over developmental time.
Scientific Applications:
- Developmental neurobiology: Enables analysis of cellular composition and transcriptional changes across 11 developmental periods of the human brain.
- Neuropsychiatric disorder research: Supports investigation of molecular and cellular signatures associated with neuropsychiatric disorders by comparing normal and disease-related transcriptomic patterns.
Methodology:
Integration of single-cell RNA sequencing data with spatial and temporal annotations to construct a spatio-temporal cell atlas of the human brain.
Topics
Details
- Added:
- 1/18/2021
- Last Updated:
- 11/24/2024
Operations
Publications
Song L, Pan S, Zhang Z, Jia L, Chen W, Zhao X. STAB: a spatio-temporal cell atlas of the human brain. Nucleic Acids Research. 2020;49(D1):D1029-D1037. doi:10.1093/nar/gkaa762. PMID:32976581. PMCID:PMC7778989.
DOI: 10.1093/nar/gkaa762
PMID: 32976581
PMCID: PMC7778989
Funding: - National Natural Science Foundation of China: 61772368, 61932008
- Shanghai Municipal Science and Technology Commission: 2018SHZDZX01
- Shanghai Science and Technology Innovation Fund: 19511101404