STAB

STAB maps spatio-temporal single-cell transcriptomic landscapes of the human brain to characterize cellular and transcriptome architecture across development and in neuropsychiatric disorders.


Key Features:

  • Single-Cell Transcriptomes: Incorporates single-cell RNA sequencing (scRNA-seq) data to provide gene expression profiles at the individual cell level.
  • Comprehensive Coverage: Includes data from 42 distinct cell subtypes across 20 brain regions spanning 11 developmental periods.
  • Spatio-Temporal Dynamics: Integrates spatial and temporal annotation to reveal regional heterogeneity and changes in cell types over developmental time.

Scientific Applications:

  • Developmental neurobiology: Enables analysis of cellular composition and transcriptional changes across 11 developmental periods of the human brain.
  • Neuropsychiatric disorder research: Supports investigation of molecular and cellular signatures associated with neuropsychiatric disorders by comparing normal and disease-related transcriptomic patterns.

Methodology:

Integration of single-cell RNA sequencing data with spatial and temporal annotations to construct a spatio-temporal cell atlas of the human brain.

Topics

Details

Added:
1/18/2021
Last Updated:
11/24/2024

Operations

Publications

Song L, Pan S, Zhang Z, Jia L, Chen W, Zhao X. STAB: a spatio-temporal cell atlas of the human brain. Nucleic Acids Research. 2020;49(D1):D1029-D1037. doi:10.1093/nar/gkaa762. PMID:32976581. PMCID:PMC7778989.

PMID: 32976581
PMCID: PMC7778989
Funding: - National Natural Science Foundation of China: 61772368, 61932008 - Shanghai Municipal Science and Technology Commission: 2018SHZDZX01 - Shanghai Science and Technology Innovation Fund: 19511101404