StarGazer
StarGazer prioritizes drug targets and facilitates digital drug repositioning by integrating multi-omics data and human domain expertise into a unified scoring framework.
Key Features:
- Multi-Omics Data Integration: Processes and integrates genomics, phenomics, and proteomics datasets from multiple sources.
- Hybrid Intelligence Framework: Combines human expertise in disease biology with computational analysis to augment target discovery and identify drug–indication associations.
- Numerical Scoring System: Computes a singular numerical target prioritization score that integrates diverse omics layers and data sources.
Scientific Applications:
- Drug Discovery and Repositioning: Ranks and prioritizes candidate drug targets and suggests drug–indication associations for digital repositioning.
- Phenotypic Trait Analysis: Provides prioritization scores for genes associated with 1844 phenotypic traits to support gene–disease association analyses.
Methodology:
A prototype pipeline integrates multi-source genomics, phenomics, and proteomics data and applies a target prioritization scoring system to compute unified numerical scores for ranking targets and drug–indication associations.
Topics
Details
- License:
- Apache-2.0
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 9/1/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Lee C, Lin J, Prokop A, Gopalakrishnan V, Hanna RN, Papa E, Freeman A, Patel S, Yu W, Huhn M, Sheikh A, Tan K, Sellman BR, Cohen T, Mangion J, Khan FM, Gusev Y, Shameer K. StarGazer: A Hybrid Intelligence Platform for Drug Target Prioritization and Digital Drug Repositioning Using Streamlit. Frontiers in Genetics. 2022;13. doi:10.3389/fgene.2022.868015. PMID:35711912. PMCID:PMC9197487.