stpm

stpm implements Stochastic Process Models (SPM) in R for joint modeling of longitudinal repeated measures and time-to-event (survival) outcomes, enabling estimation and simulation of stochastic dynamics and their impact on hazard functions.


Key Features:

  • Model Estimation: Supports discrete- and continuous-time multidimensional SPMs and one-dimensional models with time-dependent parameters for estimating stochastic dynamics.
  • Joint Modeling with Survival Analysis: Integrates stochastic processes with time-to-event outcomes to quantify effects of repeatedly measured variables on hazard functions.
  • Simulation and Projection Tools: Simulates individual trajectories and projects hazard functions for scenario analysis.
  • Data Preparation Functions: Provides utilities for preparing longitudinal datasets for SPM analysis.

Scientific Applications:

  • Clinical longitudinal studies: Modeling relationships between time-varying biomarkers and patient survival or other event outcomes.
  • Engineering reliability monitoring: Analyzing system reliability by modeling time-varying measures and failure probabilities.
  • Longitudinal research: Investigating dynamic interplay between repeatedly measured covariates and event risks in biomedical and applied settings.

Methodology:

Integration of stochastic processes with survival analysis; supports discrete- and continuous-time SPM frameworks; simulation of individual trajectories and projection of hazard functions.

Topics

Details

License:
GPL-3.0
Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
7/28/2018
Last Updated:
12/10/2018

Operations

Publications

Zhbannikov IY, Arbeev K, Akushevich I, Stallard E, Yashin AI. stpm: an R package for stochastic process model. BMC Bioinformatics. 2017;18(1). doi:10.1186/s12859-017-1538-7. PMID:28231764. PMCID:PMC5324240.

PMID: 28231764
PMCID: PMC5324240
Funding: - National Institutes of Health: P01AG043352, P30AG034424, R01AG046860

Documentation