stpm
stpm implements Stochastic Process Models (SPM) in R for joint modeling of longitudinal repeated measures and time-to-event (survival) outcomes, enabling estimation and simulation of stochastic dynamics and their impact on hazard functions.
Key Features:
- Model Estimation: Supports discrete- and continuous-time multidimensional SPMs and one-dimensional models with time-dependent parameters for estimating stochastic dynamics.
- Joint Modeling with Survival Analysis: Integrates stochastic processes with time-to-event outcomes to quantify effects of repeatedly measured variables on hazard functions.
- Simulation and Projection Tools: Simulates individual trajectories and projects hazard functions for scenario analysis.
- Data Preparation Functions: Provides utilities for preparing longitudinal datasets for SPM analysis.
Scientific Applications:
- Clinical longitudinal studies: Modeling relationships between time-varying biomarkers and patient survival or other event outcomes.
- Engineering reliability monitoring: Analyzing system reliability by modeling time-varying measures and failure probabilities.
- Longitudinal research: Investigating dynamic interplay between repeatedly measured covariates and event risks in biomedical and applied settings.
Methodology:
Integration of stochastic processes with survival analysis; supports discrete- and continuous-time SPM frameworks; simulation of individual trajectories and projection of hazard functions.
Topics
Details
- License:
- GPL-3.0
- Tool Type:
- library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 7/28/2018
- Last Updated:
- 12/10/2018
Operations
Publications
Zhbannikov IY, Arbeev K, Akushevich I, Stallard E, Yashin AI. stpm: an R package for stochastic process model. BMC Bioinformatics. 2017;18(1). doi:10.1186/s12859-017-1538-7. PMID:28231764. PMCID:PMC5324240.
PMID: 28231764
PMCID: PMC5324240
Funding: - National Institutes of Health: P01AG043352, P30AG034424, R01AG046860