Stretching DNA

Stretching DNA simulates and analyzes the mechanical properties of single-stranded DNA (ssDNA) under applied forces such as optical tweezers and fluid flow to characterize length–force relationships and elasticity.


Key Features:

  • Simulation Environment: Replicates laboratory stretching conditions for ssDNA using techniques such as optical tweezers and fluid flow.
  • Force Exploration: Allows exploration of different magnitudes of applied force to observe effects on ssDNA stretching behavior.
  • Length-Force Relationship: Measures and analyzes the relationship between stretched DNA length and the force required to maintain that stretch to assess elasticity and mechanical properties.

Scientific Applications:

  • Biophysical Research: Enables investigation of the mechanical properties of nucleic acids via simulated stretching experiments on ssDNA.
  • Educational Demonstration: Illustrates molecular biology and biophysics concepts related to polymer elasticity using ssDNA stretching simulations.
  • Data Analysis: Facilitates comparison of simulated conditions with theoretical models or experimental results to analyze length–force relationships.

Methodology:

Simulates ssDNA stretching under applied forces (optical tweezers, fluid flow) and analyzes length–force relationships and elasticity.

Topics

Details

Tool Type:
desktop application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Java
Added:
8/3/2017
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Modelling and simulation

Publications

Wieman CE, Adams WK, Perkins KK. PhET: Simulations That Enhance Learning. Science. 2008;322(5902):682-683. doi:10.1126/science.1161948. PMID:18974334.

Documentation

Links