Stretching DNA
Stretching DNA simulates and analyzes the mechanical properties of single-stranded DNA (ssDNA) under applied forces such as optical tweezers and fluid flow to characterize length–force relationships and elasticity.
Key Features:
- Simulation Environment: Replicates laboratory stretching conditions for ssDNA using techniques such as optical tweezers and fluid flow.
- Force Exploration: Allows exploration of different magnitudes of applied force to observe effects on ssDNA stretching behavior.
- Length-Force Relationship: Measures and analyzes the relationship between stretched DNA length and the force required to maintain that stretch to assess elasticity and mechanical properties.
Scientific Applications:
- Biophysical Research: Enables investigation of the mechanical properties of nucleic acids via simulated stretching experiments on ssDNA.
- Educational Demonstration: Illustrates molecular biology and biophysics concepts related to polymer elasticity using ssDNA stretching simulations.
- Data Analysis: Facilitates comparison of simulated conditions with theoretical models or experimental results to analyze length–force relationships.
Methodology:
Simulates ssDNA stretching under applied forces (optical tweezers, fluid flow) and analyzes length–force relationships and elasticity.
Topics
Details
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Java
- Added:
- 8/3/2017
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Modelling and simulation
Inputs
Outputs
Publications
Wieman CE, Adams WK, Perkins KK. PhET: Simulations That Enhance Learning. Science. 2008;322(5902):682-683. doi:10.1126/science.1161948. PMID:18974334.
PMID: 18974334