struct
The "struct" package in R introduces a set of class-based templates facilitating the development and implementation of standardized and readable statistical analysis workflows for 'omics' data. This tool addresses challenges in combining methods from diverse packages, promoting consistency and reproducibility. The "struct" package integrates with the STATistics Ontology for consistent reporting and semantic interoperability. Additionally, the "structToolbox" provides a collection of commonly used data analysis methods implemented using "struct," catering to metabolomics and other omics technologies. Both "struct" and "structToolbox" are freely available.
Topic
Metabolomics;Workflows;Proteomics experiment;Machine learning;Statistics and probability
Detail
Operation: Essential dynamics;Standardisation and normalisation;Visualisation
Software interface: -
Language: R
License: The GNU General Public License v3.0
Cost: Free
Version name: 1.14.0
Credit: The Wellcome Trust
Input: -
Output: -
Contact: Gavin Rhys Lloyd g.r.lloyd@bham.ac.uk
Collection: -
Maturity: Stable
Publications
- struct: an R/Bioconductor-based framework for standardized metabolomics data analysis and beyond.
- Lloyd GR, et al. struct: an R/Bioconductor-based framework for standardized metabolomics data analysis and beyond. struct: an R/Bioconductor-based framework for standardized metabolomics data analysis and beyond. 2021; 36:5551-5552. doi: 10.1093/bioinformatics/btaa1031
- https://doi.org/10.1093/BIOINFORMATICS/BTAA1031
- PMID: 33325493
- PMC: PMC8016465
Download and documentation
Source: http://bioconductor.org/src/contrib/struct_1.14.0.tar.gz
Documentation: http://bioconductor.org/manuals/struct/man/struct.pdf
Home page: http://bioconductor.org/packages/struct
Links: http://bioconductor.org/vignettes/struct/inst/doc/struct_templates_and_helper_functions.html
Links: http://bioconductor.org/vignettes/struct/inst/doc/struct_templates_and_helper_functions.R
< Back to DB search