Studierfenster

Studierfenster provides client-server processing and analysis of (bio-)medical imaging data including CT and MRI for visualization, segmentation, landmark detection, cranial implant design, and aortic inpainting using convolutional neural networks (CNNs) and generative adversarial networks (GANs).


Key Features:

  • Visualization: Visualizes medical data in two-dimensional (2D) and three-dimensional (3D) formats, including virtual reality (VR) environments and augmented reality (AR) applications such as facial reconstruction and registration.
  • Manual annotation: Supports manual slice-by-slice outlining of anatomical structures and placement of landmarks within imaging data.
  • Automated analysis: Implements a CNN for automatic cranial implant design, a GAN for inpainting aortic dissections, and a CNN-based method for automatic detection of aortic landmarks in CT angiography images.
  • Metric calculation: Calculates segmentation accuracy metrics including the dice score and Hausdorff distance.
  • Validation: Validates results by comparison to ground truth segmentations performed by a physician at the Medical University of Graz.
  • Architecture: Employs a client-server architecture to process 3D volumetric medical data.

Scientific Applications:

  • Diagnostic imaging: Applied to CT and MRI data for diagnostics, clinical studies, and treatment planning.
  • Surgical planning and reconstruction: Used for cranial implant design and facial reconstruction/registration.
  • Vascular analysis: Applied to aortic dissection inpainting and aortic landmark detection in CT angiography.
  • Veterinary medicine: Supports processing of CT and MRI scans in animal diagnostics.
  • Non-medical image processing: Applicable to optical measuring techniques, astronomy, and archaeology for image or volume processing tasks.

Methodology:

Client-server processing of 3D volumes; convolutional neural networks for cranial implant design and aortic landmark detection; a generative adversarial network for aortic dissection inpainting; computation of dice score and Hausdorff distance; validation by comparison to physician-derived ground truth segmentations.

Topics

Details

Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Added:
6/8/2022
Last Updated:
6/8/2022

Operations

Publications

Egger J, Wild D, Weber M, Bedoya CAR, Karner F, Prutsch A, Schmied M, Dionysio C, Krobath D, Jin Y, Gsaxner C, Li J, Pepe A. Studierfenster: an Open Science Cloud-Based Medical Imaging Analysis Platform. Journal of Digital Imaging. 2022;35(2):340-355. doi:10.1007/s10278-021-00574-8. PMID:35064372. PMCID:PMC8782222.