SuperDSM

SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.

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Details

License:: MIT
Maturity:: Emerging
Cost:: Free of charge
Tool Type:: command-line tool, library
Programming Languages:: Python
Added:: 11/2/2023
Last Updated:: 11/24/2024

Operations

Image analysis

Publications

DOI: 10.1109/tpami.2022.3185583

PMID: 35737620

Documentation

API documentation', 'Command-line options', 'Installation instructions', 'Quick start guide', 'User manual

https://superdsm.readthedocs.io

Downloads

Software package
https://anaconda.org/bioconda/superdsm/files
Source code
https://github.com/BMCV/SuperDSM

Links

Galaxy service

https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/imgteam/superdsm/ip_superdsm

Issue tracker

https://github.com/BMCV/SuperDSM/issues

Repository

https://github.com/BMCV/SuperDSM

Related Tools

galaxy_image_analysis

Relation: includedIn

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