SurfStamp

SurfStamp generates textures that encode residue-specific information directly onto protein surface models to enhance visualization and interpretation of 3D structures.


Key Features:

  • Texture Generation: Creates textures for protein surfaces that embed residue-specific data directly onto 3D models.
  • Intuitive Visualization: Overlays residue information onto the 3D object itself to indicate which residues contribute to specific surface regions.
  • Integration with PyMOL: Provides a plugin for PyMOL (Schrodinger) to incorporate texture-rendered surfaces into PyMOL analyses.

Scientific Applications:

  • Structural biology: Supports examination of surface residues implicated in protein function and stability.
  • Bioinformatics research: Supplies residue-level surface visualizations for analyses that require mapping sequence or annotation onto structures.
  • Drug design: Assists analysis of protein-ligand interfaces by visually highlighting residue contributions on binding surfaces.

Methodology:

Draws residue information directly onto protein 3D models as textures, bypassing conventional labeling functions.

Topics

Details

License:
Apache-2.0
Added:
1/18/2021
Last Updated:
2/24/2021

Operations

Publications

Oda T. SurfStamp: 3D Printer Compatible Molecular Surface Representation. Unknown Journal. 2020. doi:10.1101/2020.10.29.360701.