svreg

svreg implements structural varying-coefficient regression for model selection in varying-coefficient models with structured main predictors or modifying variables, enabling identification of how relationships between predictors and outcomes vary across groups or conditions.


Key Features:

  • Structural Varying-Coefficient Regression: Implements varying-coefficient models that allow predictor-outcome relationships to change across groups or conditions.
  • Model Selection with Structured Variables: Performs model selection while accounting for pre-specified group structures among predictors or modifying variables.
  • Pliable Lasso (plasso): Includes pliable lasso (plasso), an extension of lasso that enables variable selection across different groups or conditions.
  • Novel Variable Selection Method: Employs a variable selection approach that consistently identifies relevant variables, screens out irrelevant ones, and improves sensitivity, false discovery rates, and prediction accuracy.

Scientific Applications:

  • Neurological Research: Applied to Huntington disease studies to identify brain regions associated with motor impairment and to assess how these associations vary by patient group.
  • Personalized Medicine: Enables identification of interaction effects between disease severity and biological markers (e.g., brain regions) to support development of customized treatment plans.

Methodology:

Implements structural varying-coefficient regression and model selection with structured main predictors or modifying variables, incorporates pliable lasso (plasso), and applies a novel variable selection procedure that was empirically validated to improve sensitivity, reduce false discovery rates, and enhance prediction accuracy, including detection of interaction effects between disease severity and brain regions.

Topics

Details

Tool Type:
library
Programming Languages:
R
Added:
12/6/2021
Last Updated:
11/24/2024

Operations

Publications

Kim R, Müller S, Garcia TP. svReg: Structural varying‐coefficient regression to differentiate how regional brain atrophy affects motor impairment for Huntington disease severity groups. Biometrical Journal. 2021;63(6):1254-1271. doi:10.1002/bimj.202000312. PMID:33871905. PMCID:PMC9012319.

PMID: 33871905
PMCID: PMC9012319
Funding: - Australian Research Council: DP210100521 - National Institute of Neurological Disorders and Stroke: K01NS099343

Links