sybil

sybil is an R tool package containing algorithms to analyze metabolic networks using contraints. The sybil algorithms include flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), robustness analysis and flux variability analysis, and regulatory on/off minimization (ROOM).

Topic

Systems biology;Molecular interactions, pathways and networks;Software engineering

Detail

  • Operation: Service invocation

  • Software interface: Library

  • Language: R

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 2.2.0

  • Credit: -

  • Input: -

  • Output: -

  • Contact: mayo.roettger@hhu.de, Gabriel Gelius-Dietrich geliudie@uni-duesseldorf.de, Abdelmoneim Amer Desouki Abdelmoneim.Amer@uni-duesseldorf.de, Claus Jonathan Fritzemeier ClausJonathan.Fritzemeier@uni-duesseldorf.de, Martin J Lercher lercher@cs.uni-duesseldorf.de

  • Collection: -

  • Maturity: Mature

Publications

  • Sybil--efficient constraint-based modelling in R.
  • Gelius-Dietrich G, Desouki AA, Fritzemeier CJ, Lercher MJ. Sybil--efficient constraint-based modelling in R. BMC Syst Biol. 2013 Nov 13;7:125. doi: 10.1186/1752-0509-7-125. PMID: 24224957; PMCID: PMC3843580.
  • https://doi.org/10.1186/1752-0509-7-125
  • PMID: 24224957
  • PMC: PMC3843580

Download and documentation

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