Synergizer
Synergizer translates biological database identifiers between namespaces by maintaining gene and protein identifier synonym relationships to enable integration of genomic and proteomic data.
Key Features:
- Identifier translation: Translates identifiers across different naming schemes (namespaces) to harmonize database entries.
- Synonym repository: Maintains a comprehensive repository of gene and protein identifier synonym relationships.
- Bioinformatics database: Serves as a curated database of identifier mappings for use in downstream analyses.
- Data integration support: Enables accurate integration and comparison of data from diverse biological databases.
Scientific Applications:
- Genomics: Maps gene identifiers across databases to support genomic analyses and cross-dataset comparisons.
- Proteomics: Maps protein identifiers across proteomic resources to enable integration of protein-level data.
- Cross-database integration: Harmonizes identifiers to facilitate data integration and analysis across diverse biological databases.
Methodology:
Maintains and uses a repository of gene and protein identifier synonym relationships to map identifiers across namespaces.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Java
- Added:
- 8/3/2017
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Publications
Berriz GF and Roth FP. The Synergizer service for translating gene, protein and other biological identifiers. Bioinformatics. 2008; 24:2272-3. doi: 10.1093/bioinformatics/btn424
PMID: 18697767