Synergizer

Synergizer translates biological database identifiers between namespaces by maintaining gene and protein identifier synonym relationships to enable integration of genomic and proteomic data.


Key Features:

  • Identifier translation: Translates identifiers across different naming schemes (namespaces) to harmonize database entries.
  • Synonym repository: Maintains a comprehensive repository of gene and protein identifier synonym relationships.
  • Bioinformatics database: Serves as a curated database of identifier mappings for use in downstream analyses.
  • Data integration support: Enables accurate integration and comparison of data from diverse biological databases.

Scientific Applications:

  • Genomics: Maps gene identifiers across databases to support genomic analyses and cross-dataset comparisons.
  • Proteomics: Maps protein identifiers across proteomic resources to enable integration of protein-level data.
  • Cross-database integration: Harmonizes identifiers to facilitate data integration and analysis across diverse biological databases.

Methodology:

Maintains and uses a repository of gene and protein identifier synonym relationships to map identifiers across namespaces.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Java
Added:
8/3/2017
Last Updated:
12/10/2018

Operations

Data Inputs & Outputs

Publications

Berriz GF and Roth FP. The Synergizer service for translating gene, protein and other biological identifiers. Bioinformatics. 2008; 24:2272-3. doi: 10.1093/bioinformatics/btn424

PMID: 18697767

Documentation

Links