synergy
synergy computes drug combination synergy and antagonism as a Python library implementing multiple established synergy models to quantify interactions among pharmacological agents.
Key Features:
- Implementation of synergy models: Implements a broad array of popular synergy models to provide multiple frameworks for quantifying drug–drug interactions.
- Statistical tools: Provides evaluation of confidence intervals and power analyses to assess the reliability and significance of synergy measurements.
- Standardized analysis and visualization: Offers standardized methodologies for analyzing and visualizing synergistic and antagonistic interactions across drug combinations.
Scientific Applications:
- Pharmacological research: Supports quantification of combination effects to identify interactions among pharmacological agents.
- Identification of synergistic combinations: Enables detection of combinations that produce effects greater than single-agent treatments via multiple synergy models.
- Experimental design and hypothesis generation: Uses visualization and statistical evaluation to inform hypothesis generation and experimental planning.
Methodology:
Integrates a broad spectrum of computational synergy models and statistical techniques, including confidence interval evaluation and power analysis, to analyze drug combination data.
Topics
Details
- License:
- GPL-3.0
- Programming Languages:
- Python
- Added:
- 1/18/2021
- Last Updated:
- 2/25/2021
Operations
Publications
Wooten DJ, Albert R. synergy: a Python library for calculating, analyzing and visualizing drug combination synergy. Bioinformatics. 2020;37(10):1473-1474. doi:10.1093/bioinformatics/btaa826. PMID:32960970.
PMID: 32960970
Funding: - National Science Foundation: IIS-1814405, MCB-1715826
Links
Repository
https://github.com/djwooten/synergy