SynergyAge

SynergyAge catalogs curated lifespan and genetic-intervention data to enable analysis of synergistic and antagonistic epistatic interactions among longevity-associated genes across Caenorhabditis elegans, Drosophila melanogaster, and Mus musculus.


Key Features:

  • Curated Genetic Data: Hosts curated data on single-gene mutants and strains with multiple genetic interventions affecting lifespan in Caenorhabditis elegans, Drosophila melanogaster, and Mus musculus.
  • Epistasis Exploration: Enables analysis of non-linear and epistatic interactions among longevity-associated genes to assess synergistic and antagonistic effects on lifespan.
  • Network-based Visualization: Represents gene–lifespan relationships as network graphs to analyze combinations of genetic modifications and their cumulative effects.
  • Experimental Design Support: Provides combinatorial epistasis outcomes to inform prediction of gene synergies and dependencies for targeted lifespan experiments.

Scientific Applications:

  • Model-organism epistasis analysis: Investigate how combinations of genetic interventions affect lifespan in Caenorhabditis elegans, Drosophila melanogaster, and Mus musculus.
  • Predictive modeling of lifespan: Support development of predictive models of cumulative genetic effects on lifespan using curated combinatorial intervention data.
  • Experimental planning for lifespan studies: Inform selection of candidate gene combinations and expected synergistic or antagonistic outcomes for targeted experiments.
  • Mechanistic discovery of LAG interactions: Facilitate identification of cooperative mechanisms and non-linear genetic pathways that modulate aging.

Methodology:

Curated lifespan outcomes from single and multiple genetic interventions are organized and represented as network graphs to enable computational analysis of epistatic interactions among longevity-associated genes.

Topics

Details

Added:
1/18/2021
Last Updated:
2/25/2021

Operations

Publications

Bunu G, Toren D, Ion C, Barardo D, Sârghie L, Grigore LG, de Magalhães JP, Fraifeld VE, Tacutu R. SynergyAge: a curated database for synergistic and antagonistic interactions of longevity-associated genes. Unknown Journal. 2020. doi:10.1101/2020.04.22.054767.

Links