SynergyFinder Plus

SynergyFinder Plus analyzes drug combination dose-response data to quantify synergy and sensitivity and to evaluate clinical potential in pre-clinical anticancer research.


Key Features:

  • Extended Mathematical Models: Accommodates higher-order drug combination data analysis beyond pairwise combinations.
  • Dimension Reduction Techniques: Implements dimension reduction to visualize the synergy landscape and identify patterns in high-dimensional datasets.
  • Statistical Analysis with Confidence Intervals and P Values: Provides statistical assessment of drug combination synergy and sensitivity including confidence intervals and P values.
  • Synergy Barometer: Harmonizes multiple synergy scoring methods to generate a consensus metric for synergy.
  • Unbiased Evaluation of Clinical Potential: Evaluates synergy and sensitivity to support unbiased interpretation of clinical potential.
  • Fast Annotation of Drugs and Cell Lines: Annotates drugs and cell lines with chemical and target information to support mechanism-of-action interpretation.

Scientific Applications:

  • Oncology drug combination screening: Supports pre-clinical anticancer research to identify and prioritize combinatorial therapies.
  • Pre-clinical drug discovery and development: Aids selection and evaluation of candidate drug combinations for therapeutic development.
  • Analysis of complex dose-response datasets: Enables interpretation of high-dimensional drug combination dose-response data and synergy landscapes.

Methodology:

Integration of extended mathematical models for higher-order combinations, dimension reduction for synergy landscape visualization, statistical analyses including confidence intervals and P values, harmonization of multiple synergy scoring methods via the synergy barometer, and annotation of drugs and cell lines with chemical and target information.

Topics

Details

License:
Other
Cost:
Free of charge
Tool Type:
library, web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R
Added:
10/14/2021
Last Updated:
10/14/2021

Operations

Publications

Zheng S, Wang W, Aldahdooh J, Malyutina A, Shadbahr T, Tanoli Z, Pessia A, Tang J. SynergyFinder Plus: Toward Better Interpretation and Annotation of Drug Combination Screening Datasets. Unknown Journal. 2021. doi:10.1101/2021.06.01.446564.

Documentation

Downloads