SynergyFinder Plus
SynergyFinder Plus analyzes drug combination dose-response data to quantify synergy and sensitivity and to evaluate clinical potential in pre-clinical anticancer research.
Key Features:
- Extended Mathematical Models: Accommodates higher-order drug combination data analysis beyond pairwise combinations.
- Dimension Reduction Techniques: Implements dimension reduction to visualize the synergy landscape and identify patterns in high-dimensional datasets.
- Statistical Analysis with Confidence Intervals and P Values: Provides statistical assessment of drug combination synergy and sensitivity including confidence intervals and P values.
- Synergy Barometer: Harmonizes multiple synergy scoring methods to generate a consensus metric for synergy.
- Unbiased Evaluation of Clinical Potential: Evaluates synergy and sensitivity to support unbiased interpretation of clinical potential.
- Fast Annotation of Drugs and Cell Lines: Annotates drugs and cell lines with chemical and target information to support mechanism-of-action interpretation.
Scientific Applications:
- Oncology drug combination screening: Supports pre-clinical anticancer research to identify and prioritize combinatorial therapies.
- Pre-clinical drug discovery and development: Aids selection and evaluation of candidate drug combinations for therapeutic development.
- Analysis of complex dose-response datasets: Enables interpretation of high-dimensional drug combination dose-response data and synergy landscapes.
Methodology:
Integration of extended mathematical models for higher-order combinations, dimension reduction for synergy landscape visualization, statistical analyses including confidence intervals and P values, harmonization of multiple synergy scoring methods via the synergy barometer, and annotation of drugs and cell lines with chemical and target information.
Topics
Details
- License:
- Other
- Cost:
- Free of charge
- Tool Type:
- library, web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 10/14/2021
- Last Updated:
- 10/14/2021
Operations
Publications
Zheng S, Wang W, Aldahdooh J, Malyutina A, Shadbahr T, Tanoli Z, Pessia A, Tang J. SynergyFinder Plus: Toward Better Interpretation and Annotation of Drug Combination Screening Datasets. Unknown Journal. 2021. doi:10.1101/2021.06.01.446564.
Documentation
Downloads
- Downloads pagehttps://rdrr.io/github/shuyuzheng/synergyfinder/