T-ARDIS
T-ARDIS links protein targets to adverse drug reactions by integrating drug-protein interaction and drug-ADR databases to identify statistically significant target–ADR associations for drug safety assessment.
Key Features:
- Integration of Databases: Combines data from drug-protein interaction databases and drug-ADR databases to identify associations between proteins and adverse drug reactions using drugs as connecting entities.
- Comprehensive Data Repository: Contains information on over 3,000 adverse reactions, 248 protein targets, and more than 17,000 pairwise interactions.
- Detailed Descriptions: Records include Uniprot ID, gene name, adverse effect, and drug name for each protein–drug–ADR entry.
- Flexible Search Capabilities: Entries can be retrieved by target Uniprot ID, gene name, adverse effect, or drug name.
- Statistical Association Analysis: Applies statistical analysis to detect significant associations between proteins and ADRs across integrated data sources.
Scientific Applications:
- Target safety prioritization: Enables early identification of protein targets associated with ADRs to inform pharmacology and toxicology assessments.
- ADR prediction for drug development: Predicts undesirable responses associated with protein modulation to support safer drug design.
- Computational research and data mining: Provides a curated dataset of protein–drug–ADR associations for bioinformatics analyses.
Methodology:
Statistical analysis of integrated drug-protein interaction and drug-ADR data to identify significant associations between proteins and adverse drug reactions.
Topics
Details
- License:
- Apache-2.0
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Shell, Python
- Added:
- 3/13/2022
- Last Updated:
- 3/13/2022
Operations
Data Inputs & Outputs
Publications
Galletti C, Bota PM, Oliva B, Fernandez-Fuentes N. Mining drug–target and drug–adverse drug reaction databases to identify target–adverse drug reaction relationships. Database. 2021;2021. doi:10.1093/database/baab068. PMID:34679164. PMCID:PMC8533369.
Links
Repository
https://github.com/cristian931/T-ARDIS