TACTICS

TACTICS performs time-lapse microscopy image analysis in MATLAB to quantify and analyze dynamic cellular behaviors, including tracking, fluorescence ratiometric measurements, and cell pedigree analysis for high-content studies of non-adherent cells such as hematopoietic cells.


Key Features:

  • Quality Assessment: Links analytical endpoints back to their original image positions to enable validation of analysis results.
  • Massively Parallel Analysis: Supports massively parallel processing to enable flow cytometry-like assessments and exploration of parameter relationships within image sub-populations.
  • User-Controlled Tracking: Allows definition and restriction of regions of interest for tracking and analysis.
  • Manual Correction: Provides mechanisms to adjust or override automated tracking and analysis results.
  • Post-Tracking Analysis: Computes and reports post-tracking outputs linked to original images, including cell pedigrees and normalized polarization ratios from fluorescence ratiometric measurements.

Scientific Applications:

  • High-content time-lapse imaging: Quantification of dynamic behaviors in non-adherent cells, including hematopoietic cells, in longitudinal microscopy datasets.
  • Population-level analysis: Flow cytometry-like exploration of complex relationships between parameters across image-derived sub-populations.
  • Fluorescence ratiometric analysis: Calculation and analysis of normalized polarization ratios and cell pedigrees derived from ratiometric fluorescence measurements.

Methodology:

Implemented as a MATLAB toolbox with massively parallel processing, explicit linking of analytical endpoints to original image positions, tracking with user-defined regions of interest, manual correction of automated results, and post-tracking computation of normalized polarization ratios and cell pedigrees.

Topics

Details

Tool Type:
desktop application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
MATLAB
Added:
8/3/2017
Last Updated:
11/25/2024

Operations

Publications

Shimoni R, Pham K, Yassin M, Gu M, Russell SM. TACTICS, an interactive platform for customized high-content bioimaging analysis. Bioinformatics. 2013;29(6):817-818. doi:10.1093/bioinformatics/btt035. PMID:23341500.

Documentation

Links