Tailor
Tailor performs model-based clustering of high-parameter flow cytometry data using a phenotype-aware binning scheme and multivariate Gaussian mixture modeling to identify and annotate cellular populations for comparative immunophenotyping and longitudinal studies.
Key Features:
- Phenotype-aware binning scheme: Implements an initial coarse, phenotype-sensitive binning step to manage complexity in datasets containing tens of millions of flow cytometry events.
- Multivariate Gaussian mixture modeling: Refines the coarse model with multivariate Gaussian mixture models optimized to handle heavy-tailed distributions and inter-sample variability.
- Robustness and benchmarking: Demonstrates resilience to moderate departures from Gaussian assumptions and sample variation as assessed by simulation studies and real-world datasets.
- Automated non-overlapping annotations: Produces automatic, non-overlapping cluster annotations intended to be interpretable for downstream analysis.
Scientific Applications:
- Comparative immunophenotyping: Enables consistent identification and comparison of cellular populations across different samples or experimental conditions.
- Longitudinal studies: Supports tracking of cellular population changes over time by being robust to inter-sample variation.
- High-dimensional data analysis: Facilitates clustering and interpretation of complex, high-parameter flow cytometry datasets to investigate cellular heterogeneity and function.
Methodology:
Integrates a phenotype-aware binning scheme to create an initial coarse model that is refined by multivariate Gaussian mixture modeling, explicitly accounting for heavy-tailed distributions in flow cytometry data.
Topics
Details
- Tool Type:
- command-line tool, library
- Programming Languages:
- R
- Added:
- 3/19/2021
- Last Updated:
- 4/11/2021
Operations
Publications
Ionita M, Schretzenmair R, Jones D, Moore J, Wang L, Rogers W. Tailor: Targeting heavy tails in flow cytometry data with fast, interpretable mixture modeling. Cytometry Part A. 2021;99(2):133-144. doi:10.1002/cyto.a.24307. PMID:33476090.