Taranis

cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

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Topics

Microbiology Microbial collection

Collections

Details

License:: GPL-3.0
Maturity:: Emerging
Cost:: Free of charge
Tool Type:: command-line tool
Operating Systems:: Linux
Programming Languages:: Python
Added:: 3/25/2022
Last Updated:: 3/25/2022

Operations

Data Inputs & Outputs

Sequence distance matrix generation

Inputs

Matrix
- TSV

Outputs

Distance matrix
- TSV

Nucleic acid sequence analysis

Inputs

Nucleic acid sequence
- FASTA

Outputs

Nucleic acid report
- PNG
- TSV

Genome comparison

Inputs

Outputs

Documentation

User manual

https://github.com/BU-ISCIII/taranis/wiki

Downloads

Container file
https://depot.galaxyproject.org/singularity/taranis%3A2.0.1--hdfd78af_0
Source code
Version: 2.0.1
https://github.com/BU-ISCIII/taranis

Links

Repository

https://github.com/BU-ISCIII/taranis

Issue tracker

https://github.com/BU-ISCIII/taranis/issues

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