TASI
TASI performs quantitative spatiotemporal analysis of spheroid cultures derived from explanted cancer specimens to characterize tumor spheroid dynamics such as invasion, metastasis, growth, and proliferation, including applications to non-small cell lung cancer.
Key Features:
- Spatiotemporal Segmentation: Performs segmentation of spheroid images across timepoints to delineate spheroid boundaries and temporal changes.
- Morpho-phenotypic Feature Extraction: Extracts quantitative features describing morphological and phenotypic characteristics of spheroids.
- Mathematical Modeling: Applies mathematical models to simulate and predict spheroid dynamics.
- Statistical Analysis: Performs statistical comparisons across experimental conditions to quantify variability in cell behaviors.
- Temporal Imaging Integration: Integrates temporal imaging with quantitative image analysis to capture dynamic changes in spheroid cultures.
Scientific Applications:
- Non-small cell lung cancer spheroid analysis: Analyzes non-small cell lung cancer spheroids to investigate variations in metastatic and proliferative behaviors.
- Tumor invasion and metastasis dynamics: Characterizes temporal dynamics of tumor cell invasion and metastasis in spheroid cultures.
- Spheroid growth and proliferation studies: Quantifies spheroid growth and proliferative behavior over time.
Methodology:
Integrates temporal imaging with advanced quantitative image analysis techniques including spatiotemporal segmentation, morpho-phenotypic feature extraction, mathematical modeling, and statistical comparisons.
Topics
Details
- License:
- Apache-2.0
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C++
- Added:
- 7/5/2018
- Last Updated:
- 11/25/2024
Operations
Publications
Hou Y, Konen J, Brat DJ, Marcus AI, Cooper LAD. TASI: A software tool for spatial-temporal quantification of tumor spheroid dynamics. Scientific Reports. 2018;8(1). doi:10.1038/s41598-018-25337-4. PMID:29739990. PMCID:PMC5940855.