TASI

TASI performs quantitative spatiotemporal analysis of spheroid cultures derived from explanted cancer specimens to characterize tumor spheroid dynamics such as invasion, metastasis, growth, and proliferation, including applications to non-small cell lung cancer.


Key Features:

  • Spatiotemporal Segmentation: Performs segmentation of spheroid images across timepoints to delineate spheroid boundaries and temporal changes.
  • Morpho-phenotypic Feature Extraction: Extracts quantitative features describing morphological and phenotypic characteristics of spheroids.
  • Mathematical Modeling: Applies mathematical models to simulate and predict spheroid dynamics.
  • Statistical Analysis: Performs statistical comparisons across experimental conditions to quantify variability in cell behaviors.
  • Temporal Imaging Integration: Integrates temporal imaging with quantitative image analysis to capture dynamic changes in spheroid cultures.

Scientific Applications:

  • Non-small cell lung cancer spheroid analysis: Analyzes non-small cell lung cancer spheroids to investigate variations in metastatic and proliferative behaviors.
  • Tumor invasion and metastasis dynamics: Characterizes temporal dynamics of tumor cell invasion and metastasis in spheroid cultures.
  • Spheroid growth and proliferation studies: Quantifies spheroid growth and proliferative behavior over time.

Methodology:

Integrates temporal imaging with advanced quantitative image analysis techniques including spatiotemporal segmentation, morpho-phenotypic feature extraction, mathematical modeling, and statistical comparisons.

Topics

Details

License:
Apache-2.0
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C++
Added:
7/5/2018
Last Updated:
11/25/2024

Operations

Publications

Hou Y, Konen J, Brat DJ, Marcus AI, Cooper LAD. TASI: A software tool for spatial-temporal quantification of tumor spheroid dynamics. Scientific Reports. 2018;8(1). doi:10.1038/s41598-018-25337-4. PMID:29739990. PMCID:PMC5940855.

Documentation