Taverna4Proteomics

Taverna4Proteomics orchestrates integration of bioinformatics software to execute end-to-end proteomics data processing for mass spectrometry-based protein identification and quantification.

Key Features:

• Integration of Multiple Tools: Consolidates heterogeneous proteomics software packages and their algorithms into coordinated workflows.
• Workflow orchestration with Taverna Workbench: Uses the Taverna Workbench workflow manager to orchestrate and execute integrated computational components.
• Comprehensive Data Analysis Workflow: Supports end-to-end processing from raw mass spectrometry data to protein identification and quantification.

Scientific Applications:

• Protein identification and quantification: Executes workflows that perform protein identification and quantification from mass spectrometry data.
• Integration of diverse datasets and tools: Combines heterogeneous proteomics datasets and computational tools for standardized analyses.
• Reproducible proteomics workflows: Enables reproducible and standardized computational analyses in proteomic research.

Methodology:

Orchestration of bioinformatics tools within the Taverna Workbench workflow manager and integration of software components into executable workflows for processing raw mass spectrometry data and performing protein identification and quantification.