taxgetspecies
taxgetspecies retrieves all species under specified taxon(s) to provide taxonomic data for biodiversity, phylogenetic, and ecological analyses.
Key Features:
- Species retrieval: Enumerates and returns all species entries under one or more specified taxon(s).
- Integration with EMBOSS: Operates within the EMBOSS suite and leverages its infrastructure and programming libraries.
- Extensible C programming libraries: Implements functionality using EMBOSS's extensible C libraries for development and extension.
- ACD file development: Enables customization of application interfaces via ACD file development.
- API programming guidelines: Adheres to EMBOSS API programming guidelines to support integration and extension.
- Database configuration and management: Supports configuration and management of taxonomic databases for research datasets.
Scientific Applications:
- Taxonomic research: Provides complete species lists under target taxa to support taxonomic studies.
- Biodiversity, phylogenetic, and ecological analyses: Supplies taxon-based species retrieval useful for biodiversity assessments, phylogenetic analyses, and ecological studies.
- Bioinformatics tool development: Serves as a foundation for developing or extending bioinformatics applications within EMBOSS using C libraries and ACD files.
Methodology:
Implements species retrieval using EMBOSS's extensible C programming libraries, configurable interfaces via ACD file development, and conformity with EMBOSS API programming guidelines.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Publications
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.