taxgetspecies

taxgetspecies retrieves all species under specified taxon(s) to provide taxonomic data for biodiversity, phylogenetic, and ecological analyses.


Key Features:

  • Species retrieval: Enumerates and returns all species entries under one or more specified taxon(s).
  • Integration with EMBOSS: Operates within the EMBOSS suite and leverages its infrastructure and programming libraries.
  • Extensible C programming libraries: Implements functionality using EMBOSS's extensible C libraries for development and extension.
  • ACD file development: Enables customization of application interfaces via ACD file development.
  • API programming guidelines: Adheres to EMBOSS API programming guidelines to support integration and extension.
  • Database configuration and management: Supports configuration and management of taxonomic databases for research datasets.

Scientific Applications:

  • Taxonomic research: Provides complete species lists under target taxa to support taxonomic studies.
  • Biodiversity, phylogenetic, and ecological analyses: Supplies taxon-based species retrieval useful for biodiversity assessments, phylogenetic analyses, and ecological studies.
  • Bioinformatics tool development: Serves as a foundation for developing or extending bioinformatics applications within EMBOSS using C libraries and ACD files.

Methodology:

Implements species retrieval using EMBOSS's extensible C programming libraries, configurable interfaces via ACD file development, and conformity with EMBOSS API programming guidelines.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Publications

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Documentation

Downloads

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