TBtools

TBtools provides a comprehensive collection of computational functions for analysis and visualization of data from high-throughput sequencing and multi-omic experiments.

Key Features:

• Extensive Functionality: Contains over 130 functions covering bulk sequence processing and diverse bioinformatic analyses for big-data biology.
• Interactive Visualization (JIGplot): Integration with the JIGplot engine enables interactive modification of nearly every graphic element for data exploration and figure generation.
• Sequencing and Multi‑omics Support: Provides functions for processing and visualization of large-scale sequencing datasets and for integrated analyses across genomics, transcriptomics, proteomics, and metabolomics.

Scientific Applications:

• Genomics and Transcriptomics: Facilitates processing and visualization of large-scale sequencing datasets from genomics and transcriptomics studies.
• Proteomics and Metabolomics: Enables integrated analyses of complex biological samples in proteomics and metabolomics.
• Systems Biology: Assists modeling and interpretation of multi-omic datasets for systems-level analyses.

Methodology:

Implements over 130 computational functions for bulk sequence processing and data visualization and uses the JIGplot plotting engine for interactive graphic modification.