thaf

thaf is a command-line tool to extract transcript sequences from a genome FASTA file based on GFF3 annotation files. It can also generate transcript-to-gene mapping files compatible with tools such as Salmon.

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Topics

Bioinformatics RNA-Seq Transcriptomics

Details

License:: BSD-3-Clause
Maturity:: Emerging
Cost:: Free of charge
Tool Type:: command-line tool
Operating Systems:: Linux, Mac, Windows
Programming Languages:: Rust
Added:: 12/15/2025
Last Updated:: 12/22/2025

Operations

Sequence coordinate conversion

Data Inputs & Outputs

Sequence coordinate conversion

Inputs

DNA sequence

Outputs

Sequence set (nucleic acid)

Documentation

General

https://crates.io/crates/thaf

README provides enough information to use the tool

Downloads

Other
Version: 0.0.4
https://crates.io/crates/thaf
Use Cargo commands to install the application. Cargo will build it from the source.

Links

Software catalogue

https://crates.io/crates/thaf

(Crates.io page providing installation instructions and README.)

Repository

https://github.com/bourumir-wyngs/thaf

(Source code. Also, use GitHub issue tracker to send bug reports and extension proposals.)

Other

https://verdanta.tech/open-source/

(Verdanta page for thaf)

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