ThermusQ
ThermusQ consolidates genomic and pathway data for Thermus thermophilus, T. oshimai, and related Thermus phages across 22 strains to support comparative genomics and metabolic analyses.
Key Features:
- Genomic Data Repository: Hosts genome sequences from 22 strains of Thermus thermophilus and T. oshimai and includes sequences from known Thermus phages.
- Pathway Mapping: Provides detailed metabolic pathway maps specific to Thermus strains for analysis of biochemical capabilities and adaptations.
- Data Retrieval Tools: Includes tools for accessing and retrieving sequence and pathway data for downstream analysis.
- Strain-Specific Insights: Aggregates genomic data to enable identification of strain-specific genetic features and diversity within Thermus thermophilus.
Scientific Applications:
- Comparative Genomics: Compare genomes across strains to identify evolutionary trends and functional genomic differences.
- Metabolic Pathway Analysis: Analyze Thermus-specific metabolic processes using pathway maps to investigate biochemical capabilities relevant to biotechnology and industrial microbiology.
- Biochemical Simulations: Provide datasets for modeling cellular processes and simulating biochemical pathways in Thermus species.
Methodology:
Integration of genomic sequences with pathway information, meticulous data curation, and development of tools for data retrieval and analysis.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- web application
- Added:
- 1/8/2024
- Last Updated:
- 11/24/2024
Operations
Publications
Hijikata A, Oshima T, Yura K, Bessho Y. ThermusQ: Toward the cell simulation platform for <i>Thermus thermophilus</i>. The Journal of General and Applied Microbiology. 2023;69(2):59-67. doi:10.2323/jgam.2023.07.001. PMID:37460312.
PMID: 37460312