Thunor
Thunor analyzes high-throughput end-point and time-based cell proliferation datasets to manage, process, and derive dose-response metrics such as IC50 for comparative analysis across cell lines, drugs, concentrations, and tags.
Key Features:
- Data Management: Supports end-point and time-based proliferation assays and provides plate-map annotation for cell lines, drugs, and concentrations.
- Visualization: Generates plots of cell proliferation time courses and dose-response curves and reports derived metrics such as IC50, with dataset aggregation and grouping by tags.
- Statistical Analysis: Uses a tagging system to enable aggregation, visualization, and statistical comparisons based on attributes such as cell line mutations or drug classes/target pathways.
- Data Sharing and Access Control: Implements dataset sharing and access-control mechanisms to enable controlled collaborative use of datasets.
Scientific Applications:
- High-throughput screening and drug-response profiling: Applied to large-scale drug screening efforts for drug discovery and development to characterize dose-dependent responses.
- Large-scale dataset integration and interpretation: Used to analyze and interpret cell viability databases and in-house proliferation-rate datasets to derive comparative drug-response metrics.
Methodology:
Processes end-point and time-based proliferation assay data, computes dose-response curves and derived metrics (e.g., IC50), and performs aggregation and statistical comparisons using tags.
Topics
Details
- License:
- GPL-3.0
- Tool Type:
- library, web application
- Programming Languages:
- Python
- Added:
- 12/13/2021
- Last Updated:
- 11/24/2024
Operations
Publications
Lubbock ALR, Harris LA, Quaranta V, Tyson DR, Lopez CF. Thunor: visualization and analysis of high-throughput dose–response datasets. Nucleic Acids Research. 2021;49(W1):W633-W640. doi:10.1093/nar/gkab424. PMID:34038546. PMCID:PMC8265171.
DOI: 10.1093/nar/gkab424
PMID: 34038546
PMCID: PMC8265171
Funding: - National Science Foundation: 1411482, 1942255
- National Cancer Institute: K22CA237857, R50CA243783, U01CA215845, U54CA217450
- National Library of Medicine: 5T15-LM007450-14
- Defense Advanced Research Projects Agency: W911 NF-14-2-0022