TIGA
TIGA prioritizes gene-trait associations from genome-wide association studies (GWAS) to support drug target ranking by aggregating multistudy evidence and deriving confidence scores that link protein-coding genes to phenotypes.
Key Features:
- Rational Ranking and Filtering: Provides systematic evaluation of the strength, specificity, and relevance of genotype-phenotype associations derived from GWAS data for target prioritization.
- Data Aggregation Across Studies: Aggregates GWAS data across multiple studies using existing curation and harmonization efforts to enable cross-study assessment of associations.
- Confidence Scoring System: Computes confidence scores for gene-trait associations using aggregated statistics and bibliometric metrics, including iCite Relative Citation Ratio and meanRank scores, to link protein-coding genes with phenotypes.
- Scientific Consensus Evaluation: Incorporates bibliometric assessment to quantify the level of scientific consensus around specific gene-trait associations.
Scientific Applications:
- Drug target hypothesis generation and prioritization: Produces ranked and scored gene-trait associations to support identification and ranking of candidate therapeutic targets from GWAS evidence.
- Cross-study interpretation of GWAS evidence: Enables assessment of association robustness and relevance by integrating evidence across multiple GWAS datasets.
Methodology:
Aggregates multivariate evidence from multiple GWAS studies, performs statistical analysis and bibliometric evaluations (including iCite Relative Citation Ratio and meanRank scores), and derives aggregated confidence scores linking protein-coding genes to phenotypes using curated and harmonized datasets.
Topics
Details
- License:
- BSD-2-Clause
- Programming Languages:
- R, Python, Shell
- Added:
- 1/18/2021
- Last Updated:
- 2/27/2021
Operations
Publications
Yang JJ, Grissa D, Lambert CG, Bologa CG, Mathias SL, Waller A, Wild DJ, Jensen LJ, Oprea TI. TIGA: Target illumination GWAS analytics. Unknown Journal. 2020. doi:10.1101/2020.11.11.378596.