timecourse
timecourse analyzes developmental microarray time course data to identify and visualize temporal gene expression patterns.
Key Features:
- Data analysis capabilities: Handles developmental microarray time course data to identify temporal changes and trends in gene expression.
- Graphical displays: Provides graphical display functionalities for visualizing complex time course gene expression datasets.
- R-based statistical analysis: Implements statistical analysis using the R programming language.
- Bioconductor interoperability: Integrates with the Bioconductor framework for interoperability with other genomic analysis packages.
Scientific Applications:
- Temporal gene expression analysis: Analyze temporal gene expression data from microarray experiments.
- Developmental biology investigation: Investigate developmental processes and regulatory mechanisms at the genomic level.
- Gene regulation studies: Generate insights into how genes are regulated during different stages of development.
Methodology:
Performs statistical analysis and visualization of developmental microarray time course data using R within the Bioconductor framework.
Topics
Collections
Details
- License:
- GPL-3.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 11/24/2024
Operations
Publications
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.