toxinpred
ToxinPred predicts peptide toxicity and guides peptide design to optimize safety profiles for therapeutic applications.
Key Features:
- Toxicity prediction algorithms: Uses computational algorithms to predict the toxic potential of peptide sequences.
- Peptide design by mutation: Suggests minimal amino acid substitutions to alter peptide toxicity.
- Sequence and structural analysis: Integrates sequence composition and structural features in the assessment.
- Physicochemical property evaluation: Considers physicochemical parameters that influence peptide behavior.
- Biological interaction simulation: Simulates potential interactions within biological systems to inform toxicity predictions.
- Peptide synthesis compatibility: Accounts for peptide synthesis–compatible modifications when proposing design changes.
Scientific Applications:
- Therapeutic peptide safety optimization: Inform design of peptides with reduced adverse effects for clinical development.
- Reduction of eukaryotic cytotoxicity: Identify and modify peptides to mitigate toxicity toward eukaryotic cells.
- Design of peptide variants: Guide selection of amino acid mutations to achieve desired toxicity profiles.
- Support for research and development: Aid academic research and pharmaceutical development focused on peptide-based therapeutics.
Methodology:
Computational algorithms integrate sequence composition, structural features, and physicochemical parameters to predict toxicity, simulate potential biological interactions, and propose minimal amino acid substitutions.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Added:
- 10/11/2022
- Last Updated:
- 10/11/2022
Operations
Publications
Gupta S, Kapoor P, Chaudhary K, Gautam A, Kumar R, Raghava GPS. Peptide Toxicity Prediction. Methods in Molecular Biology. 2014. doi:10.1007/978-1-4939-2285-7_7. PMID:25555724.
PMID: 25555724
Documentation
Links
Software catalogue
https://webs.iiitd.edu.in/raghava/toxinpred/index.html