TPpred-ATMV

TPpred-ATMV predicts multiple types of therapeutic peptides from sequence features to support therapeutic peptide discovery and drug development.


Key Features:

  • Adaptive Multi-View Tensor Learning Framework: TPpred-ATMV employs an adaptive multi-view tensor learning framework that integrates diverse sequence features to predict multiple therapeutic peptide types.
  • Class and Probability Information Construction: The method constructs class labels and probability information from various peptide sequence features.
  • Latent Subspace Construction: TPpred-ATMV builds a latent subspace among multi-view features to capture relationships between different peptide properties.
  • Auto-Weighted Multi-View Tensor Learning Model: An auto-weighted multi-view tensor learning model leverages high correlations within multi-view features to optimize predictions.
  • Performance: Experimental results showed TPpred-ATMV performs on par with or better than other state-of-the-art methods in predicting therapeutic peptides.

Scientific Applications:

  • Therapeutic peptide research and drug development: Supports identification of candidate therapeutic peptides across eight types by integrating multi-view sequence features.

Methodology:

Construct class and probability information from sequence features, build a latent subspace among multi-view features, and apply an auto-weighted multi-view tensor learning model that leverages high correlations within the data.

Topics

Details

License:
BSD-2-Clause
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python, MATLAB
Added:
7/14/2022
Last Updated:
11/24/2024

Operations

Publications

Yan K, Lv H, Guo Y, Chen Y, Wu H, Liu B. TPpred-ATMV: therapeutic peptide prediction by adaptive multi-view tensor learning model. Bioinformatics. 2022;38(10):2712-2718. doi:10.1093/bioinformatics/btac200. PMID:35561206.

PMID: 35561206
Funding: - National Natural Science Foundation of China: 62102030