TPpred-ATMV
TPpred-ATMV predicts multiple types of therapeutic peptides from sequence features to support therapeutic peptide discovery and drug development.
Key Features:
- Adaptive Multi-View Tensor Learning Framework: TPpred-ATMV employs an adaptive multi-view tensor learning framework that integrates diverse sequence features to predict multiple therapeutic peptide types.
- Class and Probability Information Construction: The method constructs class labels and probability information from various peptide sequence features.
- Latent Subspace Construction: TPpred-ATMV builds a latent subspace among multi-view features to capture relationships between different peptide properties.
- Auto-Weighted Multi-View Tensor Learning Model: An auto-weighted multi-view tensor learning model leverages high correlations within multi-view features to optimize predictions.
- Performance: Experimental results showed TPpred-ATMV performs on par with or better than other state-of-the-art methods in predicting therapeutic peptides.
Scientific Applications:
- Therapeutic peptide research and drug development: Supports identification of candidate therapeutic peptides across eight types by integrating multi-view sequence features.
Methodology:
Construct class and probability information from sequence features, build a latent subspace among multi-view features, and apply an auto-weighted multi-view tensor learning model that leverages high correlations within the data.
Topics
Details
- License:
- BSD-2-Clause
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python, MATLAB
- Added:
- 7/14/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Yan K, Lv H, Guo Y, Chen Y, Wu H, Liu B. TPpred-ATMV: therapeutic peptide prediction by adaptive multi-view tensor learning model. Bioinformatics. 2022;38(10):2712-2718. doi:10.1093/bioinformatics/btac200. PMID:35561206.
PMID: 35561206
Funding: - National Natural Science Foundation of China: 62102030