TransClust

Comprehensive clustering tool that incorporates the hidden transitive nature occuring e.g. within biomedical data sets. It is based on Weighted Transitive Graph Projection problem.

Visit Official Homepage →

Topics

Sequence analysis

Details

Maturity:: Mature
Tool Type:: command-line tool, desktop application, web application
Operating Systems:: Linux, Windows, Mac
Programming Languages:: Java
Added:: 4/20/2015
Last Updated:: 12/29/2018

Operations

Sequence clustering

Data Inputs & Outputs

Sequence clustering

Inputs

COGEME unisequence ID
- FASTA

Outputs

Alignment
- Textual format
Sequence similarity plot
- Binary format

Publications

Wittkop T, Emig D, Lange S, Rahmann S, Albrecht M, Morris JH, Böcker S, Stoye J, Baumbach J. Partitioning biological data with transitivity clustering. Nature Methods. 2010;7(6):419-420. doi:10.1038/nmeth0610-419. PMID:20508635.

DOI: 10.1038/nmeth0610-419

PMID: 20508635

Documentation

General

https://transclust.compbio.sdu.dk/main_page/general_description.php

← Back to search