TraVis Pies
TraVis Pies visualizes tracer metabolomics data by integrating metabolite abundances, tracer incorporation patterns, and positions on metabolic maps to support interpretation of metabolic pathway alterations.
Key Features:
- Integrated visualization: Visualizes and overlays metabolite abundances, tracer incorporation, and positions on metabolic maps to represent labeling patterns and distribution.
- Structured interpretation framework: Provides a structured methodology for analyzing tracer metabolomics data to interpret labeling patterns within metabolic pathways.
Scientific Applications:
- Disease-related pathway analysis: Facilitates interpretation of tracer metabolomics datasets to elucidate metabolic pathways altered in disease and to investigate tracer-derived labeling patterns linked to metabolic mechanisms.
- Identification of metabolic signatures: Supports identification of metabolic alterations that may inform potential therapeutic targets or diagnostic markers based on tracer labeling.
Methodology:
Integrates metabolite abundances, tracer incorporation, and metabolic map positions into coherent visual representations of labeling patterns.
Topics
Collections
Details
- License:
- Apache-2.0
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Linux
- Programming Languages:
- R
- Added:
- 11/23/2022
- Last Updated:
- 11/24/2024
Operations
Publications
De Craemer S, Driesen K, Ghesquière B. TraVis Pies: A Guide for Stable Isotope Metabolomics Interpretation Using an Intuitive Visualization. Metabolites. 2022;12(7):593. doi:10.3390/metabo12070593. PMID:35888717. PMCID:PMC9321460.
Documentation
Release notes
https://github.com/vibbits/mec-shiny-appsDownloads
- Source codehttps://github.com/vibbits/mec-shiny-apps