TriForC Database
TriForC Database provides a curated reference of experimentally validated triterpene biosynthesis enzymes, including oxidosqualene cyclases, cytochrome P450s, and UDP-glycosyltransferases, and mapped biosynthetic pathways for plant natural product research.
Key Features:
- Comprehensive Enzyme Catalogue: An extensive collection of experimentally validated enzymes involved in triterpene biosynthesis, including oxidosqualene cyclases, cytochrome P450s, and UDP-glycosyltransferases.
- Pathway Mapping: Detailed representation of branched triterpene biosynthetic pathways showing enzyme–substrate–product relationships across plant species.
- Facilitation of Gene Mining: Provision of enzymatic data to identify candidate genes for engineering or discovery of triterpene biosynthetic activities.
- Support for Synthetic Biology: Data intended to inform the design and assembly of genetic toolboxes and engineered biosynthetic routes for production of high-value triterpenes.
Scientific Applications:
- Biosynthetic and enzymology studies: Analysis of enzyme functions and pathway topology to elucidate triterpene biosynthesis mechanisms.
- Gene mining and metabolic engineering: Identification of genetic targets for heterologous expression or pathway modification to alter triterpene outputs.
- Natural product discovery and sustainable production: Support for discovery of novel triterpenes and strategies for their sustainable biosynthetic production.
- Pharmaceutical, agricultural, and nutritional development: Enabling research into triterpenes as leads or agents for anti-cancer, agronomic, or dietary supplement applications.
Methodology:
No computational methods or specific analytical pipelines were specified in the provided description.
Topics
Collections
Details
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Linux
- Added:
- 9/8/2017
- Last Updated:
- 11/24/2024
Operations
Publications
Miettinen K, Iñigo S, Kreft L, Pollier J, De Bo C, Botzki A, Coppens F, Bak S, Goossens A. The TriForC database: a comprehensive up-to-date resource of plant triterpene biosynthesis. Nucleic Acids Research. 2017;46(D1):D586-D594. doi:10.1093/nar/gkx925. PMID:29045755. PMCID:PMC5753214.