TriForC Database

TriForC Database provides a curated reference of experimentally validated triterpene biosynthesis enzymes, including oxidosqualene cyclases, cytochrome P450s, and UDP-glycosyltransferases, and mapped biosynthetic pathways for plant natural product research.


Key Features:

  • Comprehensive Enzyme Catalogue: An extensive collection of experimentally validated enzymes involved in triterpene biosynthesis, including oxidosqualene cyclases, cytochrome P450s, and UDP-glycosyltransferases.
  • Pathway Mapping: Detailed representation of branched triterpene biosynthetic pathways showing enzyme–substrate–product relationships across plant species.
  • Facilitation of Gene Mining: Provision of enzymatic data to identify candidate genes for engineering or discovery of triterpene biosynthetic activities.
  • Support for Synthetic Biology: Data intended to inform the design and assembly of genetic toolboxes and engineered biosynthetic routes for production of high-value triterpenes.

Scientific Applications:

  • Biosynthetic and enzymology studies: Analysis of enzyme functions and pathway topology to elucidate triterpene biosynthesis mechanisms.
  • Gene mining and metabolic engineering: Identification of genetic targets for heterologous expression or pathway modification to alter triterpene outputs.
  • Natural product discovery and sustainable production: Support for discovery of novel triterpenes and strategies for their sustainable biosynthetic production.
  • Pharmaceutical, agricultural, and nutritional development: Enabling research into triterpenes as leads or agents for anti-cancer, agronomic, or dietary supplement applications.

Methodology:

No computational methods or specific analytical pipelines were specified in the provided description.

Topics

Collections

Details

Maturity:
Mature
Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Linux
Added:
9/8/2017
Last Updated:
11/24/2024

Operations

Publications

Miettinen K, Iñigo S, Kreft L, Pollier J, De Bo C, Botzki A, Coppens F, Bak S, Goossens A. The TriForC database: a comprehensive up-to-date resource of plant triterpene biosynthesis. Nucleic Acids Research. 2017;46(D1):D586-D594. doi:10.1093/nar/gkx925. PMID:29045755. PMCID:PMC5753214.

Documentation