trimspace

Trimspace removes extraneous whitespace (spaces, tabs, and line breaks) from ASCII text files to standardize text input for bioinformatics analyses within the EMBOSS framework.


Key Features:

  • Whitespace removal: Eliminates unnecessary spaces, tabs, and line breaks in ASCII text files to produce standardized text for downstream processing.
  • EMBOSS integration: Operates within the EMBOSS suite to enable compatibility with other EMBOSS applications and workflows.

Scientific Applications:

  • Preprocessing for sequence and annotation data: Ensures accurate parsing and processing of sequence data, annotations, and other bioinformatics text datasets by removing extraneous whitespace.

Methodology:

Implements text-manipulation functionality using EMBOSS C libraries.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Publications

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Documentation

Downloads

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