trimspace
Trimspace removes extraneous whitespace (spaces, tabs, and line breaks) from ASCII text files to standardize text input for bioinformatics analyses within the EMBOSS framework.
Key Features:
- Whitespace removal: Eliminates unnecessary spaces, tabs, and line breaks in ASCII text files to produce standardized text for downstream processing.
- EMBOSS integration: Operates within the EMBOSS suite to enable compatibility with other EMBOSS applications and workflows.
Scientific Applications:
- Preprocessing for sequence and annotation data: Ensures accurate parsing and processing of sequence data, annotations, and other bioinformatics text datasets by removing extraneous whitespace.
Methodology:
Implements text-manipulation functionality using EMBOSS C libraries.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Publications
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.
Documentation
Terms of use
http://emboss.open-bio.org/html/dev/ch01s01.htmlCitation instructions
http://emboss.open-bio.org/html/use/pr02s04.html