urlget
urlget retrieves URLs of molecular biology data resources to enable programmatic access to external sequence and database records.
Key Features:
- URL retrieval: Retrieves URLs for molecular biology datasets and external database records.
- EMBOSS integration: Integrated into the EMBOSS suite to operate within its software framework.
- EMBOSS C libraries: Implemented using the EMBOSS C programming libraries for robustness and extensibility.
- ACD-based extensibility: Uses ACD file configuration for application definition and customization.
Scientific Applications:
- Programmatic data acquisition: Automates retrieval of dataset and database-record URLs to streamline data acquisition in molecular biology workflows.
- Downstream analysis integration: Provides URL endpoints that can be consumed by sequence analysis and database-querying pipelines.
Methodology:
Implemented within the EMBOSS framework using its C programming libraries and ACD file configuration for extension and integration.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Publications
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.
Documentation
Terms of use
http://emboss.open-bio.org/html/dev/ch01s01.htmlCitation instructions
http://emboss.open-bio.org/html/use/pr02s04.html