urlget

urlget retrieves URLs of molecular biology data resources to enable programmatic access to external sequence and database records.


Key Features:

  • URL retrieval: Retrieves URLs for molecular biology datasets and external database records.
  • EMBOSS integration: Integrated into the EMBOSS suite to operate within its software framework.
  • EMBOSS C libraries: Implemented using the EMBOSS C programming libraries for robustness and extensibility.
  • ACD-based extensibility: Uses ACD file configuration for application definition and customization.

Scientific Applications:

  • Programmatic data acquisition: Automates retrieval of dataset and database-record URLs to streamline data acquisition in molecular biology workflows.
  • Downstream analysis integration: Provides URL endpoints that can be consumed by sequence analysis and database-querying pipelines.

Methodology:

Implemented within the EMBOSS framework using its C programming libraries and ACD file configuration for extension and integration.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Publications

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Documentation

Downloads

Links