ViReport

ViReport performs automated phylogenetic analyses and molecular epidemiological reporting of SARS-CoV-2 genome sequences.

Key Features:

• Automated Workflow: Automates sequential computational steps for processing large sets of viral genome sequences.
• Phylogenetic Analysis: Reconstructs evolutionary relationships among SARS-CoV-2 strains using processed genomic data.
• Molecular Epidemiological Reporting: Generates reports summarizing mutation patterns and transmission dynamics.
• Scalability: Capable of analyzing datasets of over 4,000 full genome sequences.
• Data Integration: Integrates genomic data from the NCBI Virus database.

Scientific Applications:

• Evolutionary tracing: Traces the evolution and spread of SARS-CoV-2 through phylogenetic analysis.
• Mutation and transmission analysis: Provides phylogenetic trees and epidemiological reports to study mutation patterns and transmission dynamics.
• Support for intervention development: Informs development of preventative interventions such as vaccines and antiviral treatments.

Methodology:

Integrates genomic data from the NCBI Virus database and processes sequences through automated steps to perform phylogenetic analyses and generate epidemiological reports.