VirusMINT
VirusMINT catalogs and annotates interactions between human and viral proteins to document virus-induced perturbations in the human protein interaction network.
Key Features:
- Comprehensive Interaction Data: Contains over 5,000 documented interactions involving more than 490 unique viral proteins from over 110 different viral strains.
- Focused Curation on Medically Relevant Viruses: Emphasizes interactions involving papilloma viruses, human immunodeficiency virus 1 (HIV-1), Epstein-Barr virus, hepatitis B virus, hepatitis C virus, herpesviruses, and Simian virus 40.
- Annotation of Network Perturbations: Records perturbations of the cellular protein interaction network induced by virus-encoded proteins.
Scientific Applications:
- Viral pathogenesis studies: Supports analysis of how viral proteins interact with host machinery to drive disease processes.
- Host response and mechanism research: Enables investigation of host cellular pathways affected by viral infection.
- Therapeutic target identification: Facilitates identification of human proteins and interactions that may serve as antiviral targets.
- Systems-level interaction mapping: Integrates viral–human interactions within the broader human protein interaction network for network-based analyses.
Methodology:
Manual curation from scientific literature with annotation and storage of reported viral–human protein interactions.
Topics
Details
- Tool Type:
- web application
- Added:
- 1/22/2015
- Last Updated:
- 12/29/2018
Operations
Publications
Calderone A, et al. mentha: a resource for browsing integrated protein-interaction networks. Nat Methods. 2013; 10:690-1. doi: 10.1038/nmeth.2561
Chatr-aryamontri A, Ceol A, Peluso D, Nardozza A, Panni S, Sacco F, Tinti M, Smolyar A, Castagnoli L, Vidal M, Cusick ME, Cesareni G. VirusMINT: a viral protein interaction database. Nucleic Acids Research. 2009;37(Database):D669-D673. doi:10.1093/nar/gkn739. PMID:18974184. PMCID:PMC2686573.