visPIG

visPIG visualizes genetic and genomic data to integrate diverse datasets and produce publication-ready figures.

Key Features:

• Data integration: Integrates diverse datasets from multiple sources into composite genomic figures.
• Multi-Track capability: Supports simultaneous visualization of association data, functional annotations, intensity measurements, interaction data, and heat maps, with annotation of genes and custom features.
• Multi-Region support: Plots multiple genomic regions regardless of distance or chromosome location.
• Multi-Scale visualization: Provides zoomed views of sub-regions within plots for detailed inspection.
• Data export: Exports figures as PDF or PNG and allows download of the underlying R code for local execution.
• Publication-ready output: Produces figures formatted for inclusion in publications.

Scientific Applications:

• Genomic association studies: Visualizing associations between genetic variants and phenotypic traits.
• Functional genomics: Annotating genes and regulatory elements within genomic regions.
• Epigenetic research: Integrating data on DNA methylation, histone modifications, and chromatin accessibility.
• Comparative genomics: Analyzing conserved or divergent genomic features across species or populations.

Methodology:

Generates plots using R code by integrating multiple data tracks across genomic regions and scales, and allows download of the underlying R code for local execution.