VisuaLife

VisuaLife provides interactive 2D and 3D visualization and tools for analysis of multidimensional biological datasets for computational biology, bioinformatics, and molecular modeling, including COVID-19 research.


Key Features:

  • Interactive visualization: 2D and 3D plotting capabilities for interactive exploration of biological datasets.
  • Supported biological data types: Specialized widgets for nucleotide sequences, protein sequences, 3D biomolecular structures, and multiple sequence alignments.
  • Client-side interactivity in Python: Enables implementation of client-side interactive behaviors using Python.
  • Multidimensional data handling: Support for visualization and analysis of highly multidimensional biological data.

Scientific Applications:

  • Molecular biology research: Visualization and detailed analysis of nucleotide and protein sequence data and alignments.
  • Structural biology: Interactive visualization of 3D biomolecular structures for modeling and inspection.
  • Genomic analyses: Presentation and exploration of large-scale genomic datasets.
  • Proteomic analyses: Visualization and analysis of proteomic datasets and comparative alignments.
  • Infectious disease research: Application to analyses related to SARS-CoV-2 / COVID-19 datasets.

Methodology:

Implements functionality in Python with integration with web technologies to enable client-side interactivity and 2D/3D plotting.

Topics

Details

License:
Apache-2.0
Cost:
Free of charge
Tool Type:
library
Programming Languages:
Python
Added:
1/2/2022
Last Updated:
1/2/2022

Operations

Publications

Kryś JD, Gront D. VisuaLife: library for interactive visualization in rich web applications. Bioinformatics. 2021;37(20):3662-3663. doi:10.1093/bioinformatics/btab251. PMID:33961033. PMCID:PMC8136008.

PMID: 33961033
PMCID: PMC8136008
Funding: - Polish National Science Centre: 2018/29/B/ST6/01989

Documentation

Links