VisuaLife
VisuaLife provides interactive 2D and 3D visualization and tools for analysis of multidimensional biological datasets for computational biology, bioinformatics, and molecular modeling, including COVID-19 research.
Key Features:
- Interactive visualization: 2D and 3D plotting capabilities for interactive exploration of biological datasets.
- Supported biological data types: Specialized widgets for nucleotide sequences, protein sequences, 3D biomolecular structures, and multiple sequence alignments.
- Client-side interactivity in Python: Enables implementation of client-side interactive behaviors using Python.
- Multidimensional data handling: Support for visualization and analysis of highly multidimensional biological data.
Scientific Applications:
- Molecular biology research: Visualization and detailed analysis of nucleotide and protein sequence data and alignments.
- Structural biology: Interactive visualization of 3D biomolecular structures for modeling and inspection.
- Genomic analyses: Presentation and exploration of large-scale genomic datasets.
- Proteomic analyses: Visualization and analysis of proteomic datasets and comparative alignments.
- Infectious disease research: Application to analyses related to SARS-CoV-2 / COVID-19 datasets.
Methodology:
Implements functionality in Python with integration with web technologies to enable client-side interactivity and 2D/3D plotting.
Topics
Details
- License:
- Apache-2.0
- Cost:
- Free of charge
- Tool Type:
- library
- Programming Languages:
- Python
- Added:
- 1/2/2022
- Last Updated:
- 1/2/2022
Operations
Publications
Kryś JD, Gront D. VisuaLife: library for interactive visualization in rich web applications. Bioinformatics. 2021;37(20):3662-3663. doi:10.1093/bioinformatics/btab251. PMID:33961033. PMCID:PMC8136008.
Documentation
User manual
https://visualife.readthedocs.io/Links
Issue tracker
https://bitbucket.org/dgront/visualife/jira