Vitessce

Vitessce enables integrative visualization of millions of data points across multiple coordinated views for exploration of multimodal and spatially resolved single-cell data.

Key Features:

• Multimodal data integration: Simultaneously visualizes high-dimensional transcriptomic, proteomic, genome-mapped and imaging data types.
• Spatially resolved data support: Displays spatially resolved transcripts and cell segmentations.
• Coordinated multiple views: Links multiple visualization views for synchronized exploration of data.
• Scalable visualization: Handles millions of data points including cell-type annotations and gene expression quantities.

Scientific Applications:

• Single-cell data exploration: Enables visual analysis of single-cell multiomics datasets with spatial resolution.
• Spatial transcriptomics: Supports visualization of spatially resolved transcriptomic data in tissue contexts.
• Multimodal data analysis: Facilitates integrative analysis of combined transcriptomic, proteomic and imaging measurements.

Methodology:

The sources do not provide explicit computational methodology details beyond web-based interactive visualization with multiple coordinated views.