Vizardous
Vizardous analyzes time-lapse single-cell microscopy data to visualize time-resolved cellular behaviors, augment lineage trees, and integrate statistical moments for interpretation of population dynamics from microfluidic lab-on-a-chip and live-cell imaging experiments.
Key Features:
- Interactive Visualization: Visualizes time-resolved single-cell data and population-level information to explore cellular behaviors and developmental trajectories.
- Lineage Tree Augmentation: Enhances lineage tree drawings by incorporating time-resolved cellular characteristics to reveal progression and differentiation over time.
- Statistical Analysis Integration: Integrates statistical moments to relate single-cell measurements to population averages and contextualize individual cell behavior.
- Configurable and Scriptable Analysis: Supports automated and scripted analysis workflows for tailored, reproducible data processing.
Scientific Applications:
- Developmental Biology: Analyzes lineage specification and cell fate decisions from time-lapse microscopy datasets.
- Cancer Research: Investigates cellular heterogeneity and dynamic changes within tumor cell populations observed by live-cell imaging.
- Stem Cell Studies: Characterizes differentiation trajectories and population dynamics in stem cell experiments using microfluidic lab-on-a-chip platforms.
Methodology:
Visualization of time-resolved single-cell data; augmentation of lineage tree drawings with time-resolved cellular characteristics; integration of statistical moments to connect single-cell data with population averages; configurable scripted analysis for automated processing.
Topics
Details
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Java
- Added:
- 8/3/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Helfrich S, Azzouzi CE, Probst C, Seiffarth J, Grünberger A, Wiechert W, Kohlheyer D, Nöh K. Vizardous: interactive analysis of microbial populations with single cell resolution. Bioinformatics. 2015;31(23):3875-3877. doi:10.1093/bioinformatics/btv468. PMID:26261223.