Visual Omics Explorer (VOE)
Visual Omics Explorer (VOE) provides interactive visualization and exploration of genomic, transcriptomic, epigenomic, and metagenomic datasets to facilitate interpretation of omics data.
Key Features:
- Multi-omics interactive visualization: Supports visualization and interactive exploration of genomics, transcriptomics, epigenomics, and metagenomics data.
- Data source support: Handles locally stored datasets and data retrieved from cloud storage services.
- Client-side implementation: Implemented in HTML and JavaScript to perform visualization without server-side dependencies.
Scientific Applications:
- Genomics: Visualize genomic sequences and variations to assist identification of genetic markers and analysis of hereditary traits.
- Transcriptomics: Analyze gene expression patterns across conditions or developmental stages to study regulatory mechanisms.
- Epigenomics: Explore epigenetic modifications and their impacts on gene regulation and disease-related research.
- Metagenomics: Investigate microbial community composition and functions within environmental or host-associated samples.
Methodology:
Implemented using HTML and JavaScript as a client-side visualization platform that operates without server-side dependencies and can load data from local files or cloud storage.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 5/1/2018
- Last Updated:
- 11/25/2024
Operations
Publications
Kim B, Ali T, Hosmer S, Krampis K. Visual Omics Explorer (VOE): a cross-platform portal for interactive data visualization. Bioinformatics. 2016;32(13):2050-2052. doi:10.1093/bioinformatics/btw119. PMID:27153572. PMCID:PMC5860494.
PMID: 27153572
PMCID: PMC5860494
Funding: - National Institute on Minority Health and Health Disparities: G12 MD007599