VTES
VTES simulates the spread of infectious diseases within human populations using a stochastic, Python-based model to analyze transmission dynamics and intervention effects.
Key Features:
- Stochastic Simulation: Employs stochastic modeling techniques to replicate the random nature of viral transmission events among individuals.
- Reduced Representation Simulations: Focuses on a few critical variables such as infectivity and population density to reduce model complexity.
- 2D Individual Representation: Represents individuals as circles on a bounded 2D plane to visualize interactions that can lead to transmission.
- Parameter Modulation: Allows adjustment of variables including social distancing and masking to explore intervention effects.
- R0 Calculation: Includes functionality to calculate the basic reproduction number (R0) for simulated outbreaks.
- Python Implementation: Implemented in Python as the computational environment for simulation and analysis.
Scientific Applications:
- Modeling Disease Spread: Simulates and analyzes propagation of pathogens such as SARS-CoV-2 through populations considering infectivity and population density.
- Intervention Testing: Evaluates the potential effectiveness of interventions like social distancing and masking on outbreak dynamics.
- Educational Illustration: Illustrates how changes in key parameters influence epidemic outcomes for teaching epidemiology and transmission dynamics.
Methodology:
Simulates person-to-person interactions within a confined 2D space where each individual is represented as a circle; infections occur through contact between circles and outbreak progression is tracked over time.
Topics
Details
- Programming Languages:
- Python
- Added:
- 1/18/2021
- Last Updated:
- 3/14/2021
Operations
Publications
Kurtin DL, Parsons DA, Stagg SM. VTES: a stochastic Python-based tool to simulate viral transmission. F1000Research. 2020;9:1198. doi:10.12688/f1000research.26786.1.
Funding: - University of Surrey: ViceChancellorStudentship
- National Institutes of Health: R01GM108753