vulcanSpot

vulcanSpot prioritizes therapeutic vulnerabilities in cancer by integrating genome-wide screening experiments and applying a weighted scoring system to drug-gene relationships to identify candidate targets, cancer-specific gene dependencies, and drug repositioning opportunities, including genes considered undruggable.


Key Features:

  • Integration of Genome-Wide Data: Integrates genome-wide screening experiments to map genetic alterations and tumor-specific gene dependencies.
  • Prioritization of Therapeutic Options: Applies a weighted scoring system to prioritize drugs based on known drug-gene relationships and to support drug repositioning strategies.
  • Exploitation of Cancer-Specific Vulnerabilities: Identifies cancer-specific gene dependencies, including targets often considered undruggable, to expand potential therapeutic options.

Scientific Applications:

  • Oncology research: Identification and prioritization of novel therapeutic targets from genome-wide dependency data.
  • Precision/personalized medicine: Informing patient-stratified treatment strategies based on tumor-specific vulnerabilities.
  • Drug repositioning: Recommending existing drugs for new cancer indications by prioritizing drug-gene interactions.

Methodology:

Integrates data from genome-wide screening experiments, applies a weighted scoring system to known drug-gene interactions for prioritization, and identifies cancer-specific gene dependencies as candidate therapeutic targets.

Topics

Collections

Details

License:
APL-1.0
Maturity:
Mature
Cost:
Free of charge (with restrictions)
Tool Type:
api, web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R, Python
Added:
7/4/2019
Last Updated:
11/24/2024

Operations

Data Inputs & Outputs

Publications

Perales-Patón J, Di Domenico T, Fustero-Torre C, Piñeiro-Yáñez E, Carretero-Puche C, Tejero H, Valencia A, Gómez-López G, Al-Shahrour F. vulcanSpot: a tool to prioritize therapeutic vulnerabilities in cancer. Bioinformatics. 2019;35(22):4846-4848. doi:10.1093/bioinformatics/btz465. PMID:31173067. PMCID:PMC6853644.

PMID: 31173067
PMCID: PMC6853644
Funding: - Marie-Curie Career Integration: CIG334361 - Comunidad de Madrid: S2017/ 65 BMD-3778

Documentation

Links