wdCor
wdCor applies weighted distance correlation to assess associations between genetic variants and voxel-based brain imaging phenotypes in genome-wide association studies (GWAS), enabling multivariate analysis that preserves spatial continuity of imaging data.
Key Features:
- Multivariate Phenotype Analysis: wdCor treats voxel-based imaging data as a multivariate phenotype, preserving spatial continuity across voxels to increase association power.
- Weighted Distance Correlation: The core method extends distance correlation by incorporating weights that account for spatial relationships among voxels to capture complex dependencies.
- Adaptive Permutation Procedure: Statistical significance (P-values) is determined via an adaptive permutation procedure to provide robust inference while reducing computational demands.
- Enhanced Performance: Simulation studies reported superior performance compared with original distance correlation methods for high-dimensional voxel-based imaging data.
Scientific Applications:
- Imaging genetics association studies: Applied in GWAS to identify associations between genetic markers and voxel-based brain imaging phenotypes.
- Investigation of neuropsychiatric risk genes: Used to study genetic underpinnings of variations in brain structure and function relevant to neuropsychiatric disorders.
- Large-scale dataset analyses: Applicable to large-scale imaging genetics datasets, including the Alzheimer's Disease Neuroimaging Initiative (ADNI).
Methodology:
wdCor computes weighted distance correlation between genetic data and voxel-based imaging phenotypes and assesses significance using an adaptive permutation procedure.
Topics
Details
- Programming Languages:
- C, R
- Added:
- 1/18/2021
- Last Updated:
- 3/14/2021
Operations
Publications
Wen C, Yang Y, Xiao Q, Huang M, Pan W. Genome-wide association studies of brain imaging data via weighted distance correlation. Bioinformatics. 2020;36(19):4942-4950. doi:10.1093/bioinformatics/btaa612. PMID:32619001. PMCID:PMC7750969.
PMID: 32619001
PMCID: PMC7750969
Funding: - National Natural Science Foundation of China: 11701590, 11771462, 11801540, 81601562
- Natural Science Foundation of Guangdong: 2017A030310572
- Fundamental Research Funds for the Central Universities: WK2040000016, WK2040170015
- Natural Science Foundation of Anhui: 2008085QA11
- Science and Technology Planning Project of Guangzhou: 201904010417
- Natural Science Foundation of Guangdong Province of China: 2017A030310053
- Young teacher program/Fundamental Research Funds for the Central Universities: 17lgpy14
- Alzheimer’s Disease Neuroimaging Initiative (ADNI) (National Institutes of Health: U01 AG024904
- DOD ADNI (Department of Defense: W81XWH-12-2-0012