webSalvador
webSalvador analyzes Luria-Delbrück fluctuation experiment data to estimate mutation rates and perform statistical and visualization analyses of spontaneous mutations.
Key Features:
- rSalvador integration: Encapsulates most functions available in the R package rSalvador for fluctuation analysis.
- Mutation rate estimation: Provides quantitative estimation of mutation rates from fluctuation experiment data.
- Statistical evaluation: Performs statistical evaluation of experimental data from Luria-Delbrück fluctuation experiments.
- Visualization: Generates visualizations to support interpretation of mutation distributions and results.
- Containerized deployment: Packaged as a Docker image for consistent computational deployment.
Scientific Applications:
- Fluctuation experiment analysis: Analysis and interpretation of Luria-Delbrück fluctuation experiment datasets to study spontaneous mutations.
- Mutation rate quantification: Quantitative estimation of mutation rates using fluctuation experiment data.
- Statistical and visual interpretation: Statistical testing and visualization of fluctuation experiment results to support biological interpretation of mutation processes.
Methodology:
Implements functions from the R package rSalvador and is distributed as a Docker image.
Topics
Details
- Tool Type:
- web application
- Programming Languages:
- R
- Added:
- 1/2/2022
- Last Updated:
- 1/2/2022
Operations
Publications
Zheng Q. webSalvador: a Web Tool for the Luria-Delbrük Experiment. Microbiology Resource Announcements. 2021;10(20). doi:10.1128/mra.00314-21. PMID:34016679. PMCID:PMC8141511.
Documentation
Downloads
Links
Repository
https://github.com/eeeeeric/rSalvadorIssue tracker
https://github.com/eeeeeric/rSalvador/issues