WESA

WESA predicts residue solvent accessibility in protein sequences, classifying residues as buried or exposed to support structural and functional analyses including hydrophobic core identification.


Key Features:

  • Meta-predictor Approach: Employs a weighted ensemble/meta-predictor by averaging five distinct methods to classify residues into two states (buried or exposed).
  • Hydrophobic Core Identification: Identifies residues that form the hydrophobic core by predicting buried residues relevant to protein stability.
  • Predictive Accuracy: Reports an expected accuracy of 80% for two-state solvent accessibility prediction.

Scientific Applications:

  • Deleterious Mutation Prediction: Aids identification of potential sites of deleterious mutations by flagging buried residues that are often mutation-sensitive.
  • Structure Prediction: Provides solvent accessibility information that can be used to inform and improve protein structure prediction models.

Methodology:

Refines a suite of five prediction methods over an extensive dataset to produce a weighted ensemble average for two-state (buried/exposed) residue classification, with validation reported on six proteins with known mutation sites.

Topics

Details

Tool Type:
command-line tool
Operating Systems:
Linux
Added:
12/18/2017
Last Updated:
11/25/2024

Operations

Publications

Chen H. Prediction of solvent accessibility and sites of deleterious mutations from protein sequence. Nucleic Acids Research. 2005;33(10):3193-3199. doi:10.1093/nar/gki633. PMID:15937195. PMCID:PMC1142490.

Documentation

Links