WHOOPER

WHOOPER facilitates the analysis of protein co-occurrence across taxa by integrating HHblits and HMMER to identify remote homologs across extensive proteomic datasets.

Key Features:

• Remote Homolog Detection: Integrates HHblits and HMMER for efficient detection of remote homologs across extensive proteomic datasets.
• Data Representation and Filtering: Combines an original data representation with advanced dynamic filtering functionalities for real-time exploration of alignment data.
• Export Capabilities: Supports seamless export for downstream evolutionary and functional genomics research.

Scientific Applications:

• Protein Prevalence Analysis: Streamlines workflows for studying protein prevalence across taxa.
• Protein Co-occurrence Analysis: Enables analysis of protein co-occurrence patterns among phyla.
• Phylogenetic Pattern Investigation: Supports investigation of phylogenetic patterns in proteomic data.
• Evolutionary Genomics: Facilitates downstream evolutionary genomics research through data export.
• Functional Genomics: Facilitates downstream functional genomics research through data export.

Methodology:

WHOOPER integrates HHblits and HMMER for remote homolog detection across proteomic datasets.